The Short Answer

Anal pain is almost always caused by something common and very treatable — an anal fissure (a small tear), a thrombosed haemorrhoid (a blood clot in a vein), or a perianal abscess (a pocket of infection). None of these are life-threatening, but they can be genuinely awful to live with, and all of them respond well to treatment.

There is a small group of causes that are more serious — particularly a spreading infection, perianal Crohn's disease, or, rarely, anal cancer. Knowing what the warning signs look like is useful, but please don't skip straight to the worst-case scenario. For most people reading this, it isn't that.

This page explains what the common causes feel like, what the rarer serious causes look like, and exactly which symptoms should make you act quickly.

Common Causes vs Red-Flag Causes

Common (Usually Benign)

  • Anal fissure — tearing pain with bowel motions
  • Thrombosed external haemorrhoid — sudden onset, painful lump
  • Perianal abscess (early) — constant throbbing ache
  • Proctalgia fugax — brief, intense cramping, usually at night
  • Levator ani syndrome — dull pressure high in the rectum
  • Coccydynia — tailbone pain worse with sitting

Red-Flag Causes

  • Perianal abscess with spreading infection (fever, feeling very unwell)
  • Necrotising fasciitis — rare surgical emergency
  • Anal cancer — often painless at first, then persistent
  • Crohn's perianal disease — complex tunnels and abscesses
  • Pelvic infection from an internal source
  • Cancer that has spread to the pelvis

Anal Fissure — The Most Common Cause

An anal fissure is a small tear in the lining of the anal canal — the short passage your bowel motion passes through. It almost always occurs in the same spot (the back of the passage) and causes a very characteristic pain: sharp, burning, or tearing during and immediately after a bowel motion, which can then linger as a cramp or ache for anything from minutes to hours. Many people describe it as "passing broken glass." Bright red blood on the toilet paper is common.

Fissures are very common and happen to people of all ages — including young adults and women who've recently had a baby. They start when a hard stool causes a small tear, and then the surrounding muscle goes into spasm, which reduces blood flow and stops the wound from healing. It's a frustrating cycle, but it's very breakable with the right treatment.

Treatment options include diltiazem cream (a muscle relaxant applied directly), Botox injection into the sphincter muscle, and in resistant cases, a small operation called lateral internal sphincterotomy. See our article on why anal fissures won't heal for more detail.

Thrombosed External Haemorrhoid

A thrombosed external haemorrhoid is what happens when a small blood vessel near the anal opening forms a clot. It usually comes on very suddenly — you might go to bed fine and wake up with a painful, firm lump that wasn't there the night before, sometimes after straining or sitting for a long time. The lump is typically firm, tender, and a blue-purple colour.

This looks and feels alarming, but it is not dangerous. The pain is usually worst in the first couple of days and then gradually eases over 2–3 weeks as your body reabsorbs the clot. If you get to a doctor within the first 72 hours, a minor procedure under local anaesthetic to drain the clot provides very fast relief. After that window, the pain is already starting to ease on its own, so warm sitz baths, pain relief, and stool softeners are the main approach.

Perianal Abscess

A perianal abscess is a pocket of pus that forms in the soft tissue around the anus, usually from a blocked gland. Unlike fissure pain — which is mainly linked to going to the toilet — abscess pain is constant: a throbbing ache that's there all the time and gets worse when you sit, walk, or have a bowel motion.

If you look at the area, there's usually a tender, warm, swollen lump. Smaller abscesses may not be obvious at first. The key thing to know is that antibiotics alone won't fix an abscess — it needs to be surgically drained. Left untreated, it will either tunnel through the surrounding tissue on its own (often leaving a fistula — a small tunnel — behind) or keep getting bigger.

If your abscess is accompanied by a fever, rigors (shaking chills), or rapidly spreading redness of the skin nearby, that means the infection is spreading and you need to go to hospital urgently.

Functional Causes: Proctalgia Fugax and Levator Ani Syndrome

Proctalgia fugax literally means "fleeting rectal pain" — and that describes it perfectly. It's a sudden, severe cramping or stabbing pain deep in the bottom that comes from nowhere, lasts anywhere from a few seconds to a couple of minutes, and then vanishes completely. It most commonly strikes at night, waking you from sleep. It can be terrifying the first time it happens. But it's not dangerous — it's thought to be a spontaneous muscle spasm of the sphincter or pelvic floor, and no abnormality is found on examination.

Levator ani syndrome is different — it causes a dull, persistent ache or pressure sensation that feels like something is sitting inside your rectum, and it's typically worse when you've been sitting for a long time. It's thought to come from tension or dysfunction in the levator ani — the hammock-like group of muscles that forms your pelvic floor. Treatment involves pelvic floor physiotherapy, muscle relaxants, biofeedback, and occasionally Botox.

Both conditions are diagnosed by ruling out any structural cause first. They cause real discomfort but are not linked to serious disease.

Coccydynia

Coccydynia is pain from the coccyx — the small triangular bone at the very base of your spine, sometimes called the tailbone. Many people feel this as a deep ache near the bottom or rectum, which is why they end up in a colorectal surgeon's office rather than with a physio. The pain is typically worse after sitting for a long time, when you stand up from a chair, and sometimes during bowel motions.

Common causes include a fall onto the tailbone, childbirth, prolonged sitting on hard surfaces, or sometimes no obvious reason at all. Treatment is usually conservative — a cushion with a coccyx cut-out, anti-inflammatory medications, physiotherapy, and in resistant cases, a nerve block or manipulation.

Red Flags — When Anal Pain Becomes Serious

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Please seek urgent medical review if your anal pain comes with any of the following:

• Fever above 38°C, chills, or feeling generally unwell and not yourself
• Pain that is getting rapidly worse and isn't related to going to the toilet
• A hard, irregular, or fixed lump near the anus
• Pain that keeps waking you from sleep (not the brief spasm of proctalgia fugax)
• Anal pain when you have known Crohn's disease
• Any anal pain if you have diabetes, HIV, or are on immune-suppressing medications
• Spreading redness around the anus, skin that looks unusual, or a crackling sensation under the skin (this last one is a rare but serious emergency)

Anal Cancer

Anal cancer is rare — it makes up around 1–2% of bowel cancers in Australia — and is strongly linked to HPV (the human papillomavirus). The good news is that the HPV vaccination program has been reducing rates in younger people.

In its early stages, anal cancer is often painless, which is one reason it can go unnoticed. When pain does come, it tends to be persistent, not clearly linked to bowel motions, and may be associated with a firm, hard, or irregular lump at the anal margin. If you have a lump near the anus that doesn't seem to fit any of the common explanations, please see a specialist to get it checked out properly.

Perianal Crohn's Disease

If you have Crohn's disease, your bottom area (perianal region) can be affected — in fact, around 25–35% of people with Crohn's develop complications there, including fissures in unusual positions, complex tunnels (fistulae), and abscesses. Perianal Crohn's can be very painful and needs a team approach involving both your gastroenterologist and a colorectal surgeon.

When to See a Specialist

Please see your GP or ask for a referral to a specialist if your anal pain:

  • Has been going on for more than 2–3 weeks without getting better
  • Is severe enough to affect your sleep or daily life
  • Comes with bleeding, discharge, or a lump
  • Includes any of the red-flag features listed above
  • Hasn't improved with dietary changes, warm baths, and over-the-counter creams

A colorectal surgeon can examine the area properly — including a gentle internal examination and a look inside with a short scope (proctoscopy) — to find out exactly what's causing your pain. Most causes are very manageable once you know what you're dealing with.

Frequently Asked Questions

I have severe anal pain but I'm too embarrassed to see a doctor. What should I do?

You're not alone in feeling this way — these symptoms are among the most under-reported in all of medicine. But your GP and any specialist you see will have examined many patients with exactly these concerns. They approach every consultation with complete professionalism and discretion. The longer you wait, the longer you stay in pain — and most causes are very treatable once seen.

My anal pain is worst after a bowel motion and lasts for an hour. Is this a fissure?

That pattern — severe pain during and for 30 minutes to 2 hours after going to the toilet — is very typical of an anal fissure. See your GP for an examination and to start a topical cream. If the fissure doesn't respond to creams, a colorectal surgeon can offer Botox or a simple operation.

I woke up last night with sudden severe rectal pain that lasted two minutes then disappeared. What was that?

That sounds exactly like proctalgia fugax — a brief, intense muscle spasm in the sphincter or pelvic floor. It's harmless, but it can be very frightening when it happens. Worth mentioning to your GP, but it's not an emergency. If episodes are happening frequently or lasting longer, a colorectal surgeon can discuss your options.

I have a very painful, swollen lump near my anus. Should I go to the emergency department?

If the lump is growing rapidly, you have a fever, or you feel unwell — yes, go to ED. A perianal abscess needs surgical drainage and shouldn't wait. If the lump came on overnight but you otherwise feel fine, an urgent appointment with your GP or a colorectal surgeon on the same day is appropriate.

Can stress cause anal pain?

Yes, it can. Proctalgia fugax and levator ani syndrome are both linked to stress, anxiety, and pelvic floor tension. That doesn't mean the pain is in your head — it's very real. It does mean that pelvic floor physiotherapy and stress management can genuinely help.

I have Crohn's disease and now have perianal pain. What should I do?

Please contact your gastroenterologist and arrange a colorectal surgical review promptly — don't wait to see if it settles. Perianal Crohn's can involve abscesses and fistulae (tunnels) that need combined medical and surgical management, and earlier treatment usually means better outcomes.

Related Procedures

Explore detailed information on the procedures discussed in this article.

Drainage of Perianal Abscess →Examination Under Anaesthetic (EUA) →

Concerned about anal pain? Get a specialist opinion.

Mr Ba Nguyen at North Eastern Surgical is experienced in finding and treating all causes of anal and perianal pain. Ask your GP for a referral, or call our rooms on (03) 9816 3951. We aim to see most patients within 1–2 weeks.